HL_8FKV_042

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_042 not in the Motif Atlas

Geometric match to HL_3PDR_001

Geometric discrepancy: 0.0941

The information below is about HL_3PDR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8FKV|1|L3|C|4603
8FKV|1|L3|G|4604
8FKV|1|L3|A|4605
8FKV|1|L3|G|4606
8FKV|1|L3|A|4607
8FKV|1|L3|G|4608

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SG

60S ribosomal protein L9

Chain SK

Eukaryotic translation initiation factor 6

Chain SR

GTP-binding protein 4