HL_8FKV_046

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8FKV|1|L3|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKV_046 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1651

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8FKV|1|L3|G|4975
8FKV|1|L3|U|4976
8FKV|1|L3|A|4977
8FKV|1|L3|G|4978
8FKV|1|L3|A|4979
8FKV|1|L3|C|4980
8FKV|1|L3|G|4981
8FKV|1|L3|A|4982
8FKV|1|L3|C|4983

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LN

60S ribosomal protein L3