HL_8FKW_028
3D structure
- PDB id
- 8FKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAGUCACGCUACG
- Length
- 13 nucleotides
- Bulged bases
- 8FKW|1|L3|G|2089, 8FKW|1|L3|C|2091, 8FKW|1|L3|U|2267, 8FKW|1|L3|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKW_028 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3435
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8FKW|1|L3|C|2087
8FKW|1|L3|A|2088
8FKW|1|L3|G|2089
8FKW|1|L3|U|2090
8FKW|1|L3|C|2091
8FKW|1|L3|A|2263
8FKW|1|L3|C|2264
8FKW|1|L3|G|2265
8FKW|1|L3|C|2266
8FKW|1|L3|U|2267
8FKW|1|L3|A|2268
8FKW|1|L3|C|2269
8FKW|1|L3|G|2270
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L18
- Chain LL
- 60S ribosomal protein L28
- Chain SA
- 60S ribosomal protein L4
- Chain SC
- 60S ribosomal protein L6
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