HL_8FKW_041

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8FKW|1|L3|G|4543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKW_041 not in the Motif Atlas

Geometric match to HL_1KUQ_001

Geometric discrepancy: 0.3648

The information below is about HL_1KUQ_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8FKW|1|L3|C|4540
8FKW|1|L3|G|4541
8FKW|1|L3|U|4542
8FKW|1|L3|G|4543
8FKW|1|L3|A|4544
8FKW|1|L3|G|4545

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NH

60S ribosome subunit biogenesis protein NIP7 homolog

Chain ST

Ribosome biogenesis regulatory protein homolog