HL_8FKW_045

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKW_045 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.133

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8FKW|1|L3|G|4907
8FKW|1|L3|G|4908
8FKW|1|L3|A|4909
8FKW|1|L3|G|4910
8FKW|1|L3|A|4911
8FKW|1|L3|G|4912
8FKW|1|L3|G|4913
8FKW|1|L3|C|4914

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3

Chain NK

Protein LLP homolog