HL_8FKY_003

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_003 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1399

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKY|1|L1|C|107
8FKY|1|L1|A|108
8FKY|1|L1|C|109
8FKY|1|L1|U|110
8FKY|1|L1|U|111
8FKY|1|L1|G|112

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LW

60S ribosomal protein L37