HL_8FKY_004

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUCCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_004 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2801

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8FKY|1|L1|G|122
8FKY|1|L1|U|123
8FKY|1|L1|U|124
8FKY|1|L1|C|125
8FKY|1|L1|C|126
8FKY|1|L1|U|127
8FKY|1|L1|C|128

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LH

60S ribosomal protein L23a

Chain SM

Pescadillo homolog

Chain SS

Ribosome biogenesis protein BOP1