HL_8FKY_022

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_022 not in the Motif Atlas

Geometric match to HL_4Y1M_003

Geometric discrepancy: 0.0913

The information below is about HL_4Y1M_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8FKY|1|L3|C|1628
8FKY|1|L3|G|1629
8FKY|1|L3|A|1630
8FKY|1|L3|A|1631
8FKY|1|L3|A|1632
8FKY|1|L3|G|1633

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Chain ST

Ribosome biogenesis regulatory protein homolog

Chain SU

Nucleolar complex protein 3 homolog