HL_8FKY_033

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8FKY|1|L3|U|2530, 8FKY|1|L3|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_033 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2756

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FKY|1|L3|G|2523
8FKY|1|L3|U|2524
8FKY|1|L3|U|2525
8FKY|1|L3|C|2526
8FKY|1|L3|A|2527
8FKY|1|L3|G|2528
8FKY|1|L3|A|2529
8FKY|1|L3|U|2530
8FKY|1|L3|C|2531
8FKY|1|L3|C|2532

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LH

60S ribosomal protein L23a