HL_8FKY_034

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_034 not in the Motif Atlas

Geometric match to HL_7RQB_046

Geometric discrepancy: 0.1222

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8FKY|1|L3|C|2561
8FKY|1|L3|G|2562
8FKY|1|L3|C|2563
8FKY|1|L3|G|2564
8FKY|1|L3|A|2565
8FKY|1|L3|G|2566

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SM

Pescadillo homolog

Chain SS

Ribosome biogenesis protein BOP1