HL_8FKY_036

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8FKY|1|L3|C|2627, 8FKY|1|L3|U|2631

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_036 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2229

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8FKY|1|L3|G|2624
8FKY|1|L3|U|2625
8FKY|1|L3|U|2626
8FKY|1|L3|C|2627
8FKY|1|L3|U|2628
8FKY|1|L3|C|2629
8FKY|1|L3|U|2630
8FKY|1|L3|U|2631
8FKY|1|L3|U|2632

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BC

WD repeat-containing protein 55

Chain LD

60S ribosomal protein L19