HL_8FKY_054

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8FKY|1|L3|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKY_054 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3962

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

8FKY|1|L3|A|4473
8FKY|1|L3|A|4474
8FKY|1|L3|G|4475
8FKY|1|L3|C|4476
8FKY|1|L3|A|4477
8FKY|1|L3|G|4478
8FKY|1|L3|A|4479
8FKY|1|L3|A|4480
8FKY|1|L3|U|4481
8FKY|1|L3|U|4482

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NI

ATP-dependent RNA helicase DDX54

Chain SG

60S ribosomal protein L9

Chain SR

GTP-binding protein 4