HL_8FKZ_038
3D structure
- PDB id
- 8FKZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGAUGGCCUCCGG
- Length
- 13 nucleotides
- Bulged bases
- 8FKZ|1|L3|A|2484, 8FKZ|1|L3|C|2488, 8FKZ|1|L3|U|2490, 8FKZ|1|L3|C|2491, 8FKZ|1|L3|G|2493
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FKZ_038 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1057
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8FKZ|1|L3|C|2482
8FKZ|1|L3|G|2483
8FKZ|1|L3|A|2484
8FKZ|1|L3|U|2485
8FKZ|1|L3|G|2486
8FKZ|1|L3|G|2487
8FKZ|1|L3|C|2488
8FKZ|1|L3|C|2489
8FKZ|1|L3|U|2490
8FKZ|1|L3|C|2491
8FKZ|1|L3|C|2492
8FKZ|1|L3|G|2493
8FKZ|1|L3|G|2496
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L23a
- Chain NL
- Ribosome biogenesis protein NOP53
- Chain SI
- 60S ribosomal protein L7-like 1
- Chain SM
- Pescadillo homolog
Coloring options: