HL_8FKZ_049

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8FKZ|1|L3|G|3875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_049 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.097

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKZ|1|L3|G|3873
8FKZ|1|L3|G|3874
8FKZ|1|L3|G|3875
8FKZ|1|L3|A|3876
8FKZ|1|L3|A|3877
8FKZ|1|L3|C|3878
8FKZ|1|L3|G|3879
8FKZ|1|L3|G|3880
8FKZ|1|L3|G|3881
8FKZ|1|L3|C|3882

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain NB

Guanine nucleotide-binding protein-like 3

Chain SR

GTP-binding protein 4