HL_8FKZ_054

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

8FKZ|1|L3|G|4499, 8FKZ|1|L3|C|4502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_054 not in the Motif Atlas

Geometric match to HL_6AJK_001

Geometric discrepancy: 0.2962

The information below is about HL_6AJK_001

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8FKZ|1|L3|U|4497
8FKZ|1|L3|U|4498
8FKZ|1|L3|G|4499
8FKZ|1|L3|U|4500
8FKZ|1|L3|U|4501
8FKZ|1|L3|C|4502
8FKZ|1|L3|A|4503

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SR

GTP-binding protein 4