HL_8FKZ_058

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8FKZ|1|L3|G|4910, 8FKZ|1|L3|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FKZ_058 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1531

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FKZ|1|L3|G|4907
8FKZ|1|L3|G|4908
8FKZ|1|L3|A|4909
8FKZ|1|L3|G|4910
8FKZ|1|L3|A|4911
8FKZ|1|L3|G|4912
8FKZ|1|L3|G|4913
8FKZ|1|L3|C|4914

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3

Chain NK

Protein LLP homolog