HL_8FL2_006

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

8FL2|1|L3|A|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1573

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FL2|1|L3|U|37
8FL2|1|L3|A|38
8FL2|1|L3|A|39
8FL2|1|L3|G|40
8FL2|1|L3|C|41
8FL2|1|L3|A|42
8FL2|1|L3|U|43
8FL2|1|L3|A|44

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15