HL_8FL2_014

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

8FL2|1|L3|G|315, 8FL2|1|L3|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_014 not in the Motif Atlas

Homologous match to HL_5TBW_009

Geometric discrepancy: 0.1754

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8FL2|1|L3|G|314
8FL2|1|L3|G|315
8FL2|1|L3|U|316
8FL2|1|L3|A|317
8FL2|1|L3|A|318
8FL2|1|L3|A|319
8FL2|1|L3|C|320
8FL2|1|L3|U|321
8FL2|1|L3|C|322
8FL2|1|L3|C|323

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LK

60S ribosomal protein L27a

Chain LU

60S ribosomal protein L36