HL_8FL2_021

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_021 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0823

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8FL2|1|L3|U|1389
8FL2|1|L3|G|1390
8FL2|1|L3|A|1391
8FL2|1|L3|A|1392
8FL2|1|L3|G|1393
8FL2|1|L3|G|1394

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LK

60S ribosomal protein L27a

Chain LU

60S ribosomal protein L36