HL_8FL2_056

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8FL2|1|L3|G|3875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL2_056 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.0951

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FL2|1|L3|G|3873
8FL2|1|L3|G|3874
8FL2|1|L3|G|3875
8FL2|1|L3|A|3876
8FL2|1|L3|A|3877
8FL2|1|L3|C|3878
8FL2|1|L3|G|3879
8FL2|1|L3|G|3880
8FL2|1|L3|G|3881
8FL2|1|L3|C|3882

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L32

Chain NB

Guanine nucleotide-binding protein-like 3

Chain SR

GTP-binding protein 4