HL_8FL7_019

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

C(OMG)UCUUAC(A2M)CG

Length

11 nucleotides

Bulged bases

8FL7|1|L3|A|1324

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL7_019 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1374

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8FL7|1|L3|C|1315
8FL7|1|L3|OMG|1316
8FL7|1|L3|U|1317
8FL7|1|L3|C|1318
8FL7|1|L3|U|1319
8FL7|1|L3|U|1320
8FL7|1|L3|A|1324
8FL7|1|L3|C|1325
8FL7|1|L3|A2M|1326
8FL7|1|L3|C|1327
8FL7|1|L3|G|1328

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L27a

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4