HL_8FL7_035

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8FL7|1|L3|G|2421, 8FL7|1|L3|A|2423, 8FL7|1|L3|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FL7_035 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2144

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8FL7|1|L3|A|2420
8FL7|1|L3|G|2421
8FL7|1|L3|OMC|2422
8FL7|1|L3|A|2423
8FL7|1|L3|OMG|2424
8FL7|1|L3|U|2425
8FL7|1|L3|U|2426

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LD

60S ribosomal protein L19

Chain SR

GTP-binding protein 4