HL_8FL7_067
3D structure
- PDB id
- 8FL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FL7_067 not in the Motif Atlas
- Geometric match to HL_5B2P_001
- Geometric discrepancy: 0.0989
- The information below is about HL_5B2P_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 397
Unit IDs
8FL7|1|L3|C|4603
8FL7|1|L3|G|4604
8FL7|1|L3|A|4605
8FL7|1|L3|G|4606
8FL7|1|L3|A|4607
8FL7|1|L3|G|4608
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain SG
- 60S ribosomal protein L9
- Chain SK
- Eukaryotic translation initiation factor 6
- Chain SQ
- mRNA turnover protein 4 homolog
- Chain SR
- GTP-binding protein 4
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