HL_8FLA_001
3D structure
- PDB id
- 8FLA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State K1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FLA_001 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2938
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8FLA|1|L1|C|47
8FLA|1|L1|A|48
8FLA|1|L1|G|49
8FLA|1|L1|C|50
8FLA|1|L1|U|51
8FLA|1|L1|A|52
8FLA|1|L1|G|53
8FLA|1|L1|C|54
8FLA|1|L1|PSU|55
8FLA|1|L1|G|56
Current chains
- Chain L1
- 5.8S rRNA
Nearby chains
- Chain L3
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- 60S ribosomal protein L23a
- Chain LS
- 60S ribosomal protein L35
- Chain LW
- 60S ribosomal protein L37
- Chain LZ
- 60S ribosomal protein L39
- Chain SR
- GTP-binding protein 4
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