HL_8FLA_037

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLA_037 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1816

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8FLA|1|L3|A|2376
8FLA|1|L3|C|2377
8FLA|1|L3|G|2378
8FLA|1|L3|A|2379
8FLA|1|L3|G|2380
8FLA|1|L3|A|2381
8FLA|1|L3|A|2382
8FLA|1|L3|C|2383
8FLA|1|L3|U|2384

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LD

60S ribosomal protein L19

Chain LP

60S ribosomal protein L31