HL_8FLA_070

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLA_070 not in the Motif Atlas

Geometric match to HL_5B2P_001

Geometric discrepancy: 0.0829

The information below is about HL_5B2P_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8FLA|1|L3|C|4603
8FLA|1|L3|G|4604
8FLA|1|L3|A|4605
8FLA|1|L3|G|4606
8FLA|1|L3|A|4607
8FLA|1|L3|G|4608

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SG

60S ribosomal protein L9

Chain SK

Eukaryotic translation initiation factor 6

Chain SR

GTP-binding protein 4

Chain VB

Leydig cell tumor 10 kDa protein homolog