HL_8FLC_041

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8FLC|1|L3|U|2530, 8FLC|1|L3|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLC_041 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1461

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FLC|1|L3|G|2523
8FLC|1|L3|U|2524
8FLC|1|L3|U|2525
8FLC|1|L3|C|2526
8FLC|1|L3|A|2527
8FLC|1|L3|G|2528
8FLC|1|L3|A|2529
8FLC|1|L3|U|2530
8FLC|1|L3|C|2531
8FLC|1|L3|C|2532

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LH

60S ribosomal protein L23a

Chain LR

60S ribosomal protein L34