HL_8FLD_030

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8FLD|1|L3|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_030 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3311

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8FLD|1|L3|C|1816
8FLD|1|L3|U|1817
8FLD|1|L3|G|1818
8FLD|1|L3|G|1819
8FLD|1|L3|C|1820
8FLD|1|L3|G|1821
8FLD|1|L3|U|1822
8FLD|1|L3|G|1823

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29

Chain SB

60S ribosomal protein L5