HL_8FLD_033

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGCGCGGACGCUACG

Length

38 nucleotides

Bulged bases

8FLD|1|L3|U|2097, 8FLD|1|L3|U|2267, 8FLD|1|L3|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FLD|1|L3|C|2087
8FLD|1|L3|A|2088
8FLD|1|L3|G|2089
8FLD|1|L3|U|2090
8FLD|1|L3|C|2091
8FLD|1|L3|G|2092
8FLD|1|L3|A|2093
8FLD|1|L3|G|2094
8FLD|1|L3|A|2095
8FLD|1|L3|G|2096
8FLD|1|L3|U|2097
8FLD|1|L3|G|2098
8FLD|1|L3|G|2099
8FLD|1|L3|A|2100
8FLD|1|L3|C|2101
8FLD|1|L3|G|2102
8FLD|1|L3|G|2103
8FLD|1|L3|G|2104
8FLD|1|L3|A|2105
8FLD|1|L3|G|2106
8FLD|1|L3|C|2107
8FLD|1|L3|G|2108
8FLD|1|L3|G|2109
8FLD|1|L3|C|2110
8FLD|1|L3|G|2111
8FLD|1|L3|C|2258
8FLD|1|L3|G|2259
8FLD|1|L3|C|2260
8FLD|1|L3|G|2261
8FLD|1|L3|G|2262
8FLD|1|L3|A|2263
8FLD|1|L3|C|2264
8FLD|1|L3|G|2265
8FLD|1|L3|C|2266
8FLD|1|L3|U|2267
8FLD|1|L3|A|2268
8FLD|1|L3|C|2269
8FLD|1|L3|G|2270

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain LL

60S ribosomal protein L28

Chain LM

60S ribosomal protein L29

Chain SA

60S ribosomal protein L4

Chain SC

60S ribosomal protein L6

Chain SD

60S ribosomal protein L7