HL_8FLD_052

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8FLD|1|L3|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_052 not in the Motif Atlas

Geometric match to HL_4PQV_001

Geometric discrepancy: 0.3209

The information below is about HL_4PQV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8FLD|1|L3|C|3668
8FLD|1|L3|G|3669
8FLD|1|L3|C|3670
8FLD|1|L3|G|3671
8FLD|1|L3|G|3672
8FLD|1|L3|C|3673
8FLD|1|L3|G|3674

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8