HL_8FLD_053

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_053 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2775

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FLD|1|L3|G|3722
8FLD|1|L3|A|3723
8FLD|1|L3|A2M|3724
8FLD|1|L3|G|3725
8FLD|1|L3|A|3726
8FLD|1|L3|A|3727
8FLD|1|L3|A|3728
8FLD|1|L3|U|3729
8FLD|1|L3|PSU|3730
8FLD|1|L3|C|3731

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L36

Chain LV

60S ribosomal protein L36a