HL_8FLD_054

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGCGGGC

Length

7 nucleotides

Bulged bases

8FLD|1|L3|C|3878

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_054 not in the Motif Atlas

Geometric match to HL_4FRG_003

Geometric discrepancy: 0.246

The information below is about HL_4FRG_003

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

8FLD|1|L3|G|3873
8FLD|1|L3|G|3874
8FLD|1|L3|C|3878
8FLD|1|L3|G|3879
8FLD|1|L3|G|3880
8FLD|1|L3|G|3881
8FLD|1|L3|C|3882

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L32