HL_8FLD_069

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8FLD|1|L3|G|4694, 8FLD|1|L3|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLD_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1725

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FLD|1|L3|C|4688
8FLD|1|L3|PSU|4689
8FLD|1|L3|G|4690
8FLD|1|L3|A|4691
8FLD|1|L3|A|4692
8FLD|1|L3|C|4693
8FLD|1|L3|G|4694
8FLD|1|L3|C|4695
8FLD|1|L3|C|4696
8FLD|1|L3|U|4697
8FLD|1|L3|C|4698
8FLD|1|L3|U|4699
8FLD|1|L3|A|4700
8FLD|1|L3|A|4701
8FLD|1|L3|G|4702

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain SG

60S ribosomal protein L9