HL_8FLE_039

3D structure

PDB id

8FLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8FLE|1|L3|U|2530, 8FLE|1|L3|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLE_039 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0926

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FLE|1|L3|G|2523
8FLE|1|L3|U|2524
8FLE|1|L3|U|2525
8FLE|1|L3|C|2526
8FLE|1|L3|A|2527
8FLE|1|L3|G|2528
8FLE|1|L3|A|2529
8FLE|1|L3|U|2530
8FLE|1|L3|C|2531
8FLE|1|L3|C|2532

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LH

60S ribosomal protein L23a

Chain LR

60S ribosomal protein L34