HL_8FLE_068

3D structure

PDB id

8FLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8FLE|1|L3|G|4694, 8FLE|1|L3|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLE_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1772

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FLE|1|L3|C|4688
8FLE|1|L3|PSU|4689
8FLE|1|L3|G|4690
8FLE|1|L3|A|4691
8FLE|1|L3|A|4692
8FLE|1|L3|C|4693
8FLE|1|L3|G|4694
8FLE|1|L3|C|4695
8FLE|1|L3|C|4696
8FLE|1|L3|U|4697
8FLE|1|L3|C|4698
8FLE|1|L3|U|4699
8FLE|1|L3|A|4700
8FLE|1|L3|A|4701
8FLE|1|L3|G|4702

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain SG

60S ribosomal protein L9