HL_8FLE_075

3D structure

PDB id

8FLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8FLE|1|L3|1MA|1322, 8FLE|1|L3|A|1323

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLE_075 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2378

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8FLE|1|L3|U|1317
8FLE|1|L3|C|1318
8FLE|1|L3|U|1319
8FLE|1|L3|U|1320
8FLE|1|L3|G|1321
8FLE|1|L3|1MA|1322
8FLE|1|L3|A|1323
8FLE|1|L3|A|1324
8FLE|1|L3|C|1325
8FLE|1|L3|A2M|1326

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L27a

Chain LQ

60S ribosomal protein L32