HL_8FLF_009

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8FLF|1|L3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLF_009 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2288

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8FLF|1|L3|U|204
8FLF|1|L3|C|205
8FLF|1|L3|U|206
8FLF|1|L3|G|207
8FLF|1|L3|A|208
8FLF|1|L3|U|209
8FLF|1|L3|C|210
8FLF|1|L3|G|211

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain LQ

60S ribosomal protein L32