HL_8FLF_052

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FLF_052 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2902

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8FLF|1|L3|G|3722
8FLF|1|L3|A|3723
8FLF|1|L3|A2M|3724
8FLF|1|L3|G|3725
8FLF|1|L3|A|3726
8FLF|1|L3|A|3727
8FLF|1|L3|A|3728
8FLF|1|L3|U|3729
8FLF|1|L3|PSU|3730
8FLF|1|L3|C|3731

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L36

Chain LV

60S ribosomal protein L36a