HL_8FOM_004

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

8FOM|1|QA|U|189, 8FOM|1|QA|G|190, 8FOM|1|QA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_004 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.3794

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

8FOM|1|QA|C|186|||F
8FOM|1|QA|C|187
8FOM|1|QA|U|188
8FOM|1|QA|U|189
8FOM|1|QA|G|190
8FOM|1|QA|G|191
8FOM|1|QA|G|191|||A

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20