HL_8FOM_008

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0964

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FOM|1|QA|C|320
8FOM|1|QA|A|321
8FOM|1|QA|C|322
8FOM|1|QA|U|323
8FOM|1|QA|G|324
8FOM|1|QA|A|325
8FOM|1|QA|G|326
8FOM|1|QA|A|327
8FOM|1|QA|C|328
8FOM|1|QA|A|329
8FOM|1|QA|C|330
8FOM|1|QA|G|331
8FOM|1|QA|G|332
8FOM|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20