HL_8FOM_065

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

8FOM|1|RA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_065 not in the Motif Atlas

Geometric match to HL_6N5P_004

Geometric discrepancy: 0.3437

The information below is about HL_6N5P_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8FOM|1|RA|G|1091
8FOM|1|RA|C|1092
8FOM|1|RA|G|1093
8FOM|1|RA|U|1094
8FOM|1|RA|A|1095
8FOM|1|RA|A|1096
8FOM|1|RA|U|1097
8FOM|1|RA|A|1098
8FOM|1|RA|G|1099
8FOM|1|RA|C|1100

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6