HL_8FOM_089

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8FOM|1|RA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FOM_089 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1137

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8FOM|1|RA|C|2248
8FOM|1|RA|U|2249
8FOM|1|RA|G|2250
8FOM|1|RA|G|2251
8FOM|1|RA|G|2252
8FOM|1|RA|G|2253
8FOM|1|RA|C|2254
8FOM|1|RA|G|2255
8FOM|1|RA|G|2256

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16