HL_8FOM_225
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- AUU(MNU)UU(T6A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: MNU, T6A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FOM_225 not in the Motif Atlas
- Homologous match to HL_1FIR_005
- Geometric discrepancy: 0.1878
- The information below is about HL_1FIR_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8FOM|1|XV|A|31
8FOM|1|XV|U|32
8FOM|1|XV|U|33
8FOM|1|XV|MNU|34
8FOM|1|XV|U|35
8FOM|1|XV|U|36
8FOM|1|XV|T6A|37
8FOM|1|XV|A|38
8FOM|1|XV|PSU|39
Current chains
- Chain XV
- P-site tRNA^Lys(SUU)
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XI
- 30S ribosomal protein S9
- Chain XM
- 30S ribosomal protein S13
- Chain XX
- mRNA
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