HL_8FON_064

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

8FON|1|RA|A|1067, 8FON|1|RA|G|1068, 8FON|1|RA|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_064 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2946

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8FON|1|RA|U|1065
8FON|1|RA|U|1066
8FON|1|RA|A|1067
8FON|1|RA|G|1068
8FON|1|RA|A|1069
8FON|1|RA|A|1070
8FON|1|RA|G|1071
8FON|1|RA|C|1072
8FON|1|RA|A|1073

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16