HL_8FON_066

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

8FON|1|RA|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_066 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.173

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8FON|1|RA|G|1170
8FON|1|RA|G|1171
8FON|1|RA|G|1173
8FON|1|RA|A|1174
8FON|1|RA|U|1175
8FON|1|RA|G|1176
8FON|1|RA|A|1177
8FON|1|RA|C|1178
8FON|1|RA|C|1179

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RV

50S ribosomal protein L21