HL_8FON_115

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_115 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1197

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FON|1|XA|C|320
8FON|1|XA|A|321
8FON|1|XA|C|322
8FON|1|XA|U|323
8FON|1|XA|G|324
8FON|1|XA|A|325
8FON|1|XA|G|326
8FON|1|XA|A|327
8FON|1|XA|C|328
8FON|1|XA|A|329
8FON|1|XA|C|330
8FON|1|XA|G|331
8FON|1|XA|G|332
8FON|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20