HL_8FON_175

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_175 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.1229

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8FON|1|YA|C|1223
8FON|1|YA|G|1224
8FON|1|YA|C|1225
8FON|1|YA|G|1226
8FON|1|YA|A|1227
8FON|1|YA|G|1228

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21