HL_8FON_204

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FON_204 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1262

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FON|1|YA|C|2471
8FON|1|YA|G|2472
8FON|1|YA|U|2473
8FON|1|YA|C|2474
8FON|1|YA|C|2475
8FON|1|YA|A|2476
8FON|1|YA|C|2477
8FON|1|YA|A|2478
8FON|1|YA|G|2479

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YQ

50S ribosomal protein L16