HL_8FR8_013

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8FR8|1|A|G|411, 8FR8|1|A|A|412, 8FR8|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0897

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8FR8|1|A|G|409
8FR8|1|A|U|410
8FR8|1|A|G|411
8FR8|1|A|A|412
8FR8|1|A|G|413
8FR8|1|A|A|414
8FR8|1|A|G|415
8FR8|1|A|C|416
8FR8|1|A|C|417

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 1

50S ribosomal protein L24

Chain M

50S ribosomal protein L4