HL_8FR8_015

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8FR8|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_015 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0892

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

8FR8|1|A|G|498
8FR8|1|A|G|499
8FR8|1|A|A|500
8FR8|1|A|C|501
8FR8|1|A|C|502
8FR8|1|A|A|503
8FR8|1|A|C|504
8FR8|1|A|C|505

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L15